JSON

Genome sc|0002362

Name

“Thermosaccharophagus yellowstonensis”

Database

NCBI Assembly

Accession

GCA_041537945.1

Genomics

Accession
NCBI Assembly:GCA_041537945.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.28%
  • Contamination: 0.4%
  • Quality: 94.28
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
242.9 ×
Source
Other features
  • G+C Content: 51.0%
  • Coding Density: 93.38%
  • Codon Table: 11
  • N50: 80,640 bp
  • Contigs: 52
  • Largest Contig: 243,485 bp
  • Assembly Length: 2,445,150 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2012-10-04
Location
Lat Lon: 44.376 N 110.69 W
Toponym
Geo Loc Name: USA:Washburn Spring, Yellowstone National Park, Wyoming • USA: Washburn Spring, Yellowstone National Park, Wyoming
Environment
Sample Type: metagenomic assembly
Isolation Source: hot spring sediment • Sulfidic spring water
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: spring [ENVO:00000027]
Env Medium: alkaline water [ENVO:01000357]
Gold Ecosystem Classification: Environmental | Aquatic | Thermal springs | Hot (42-90C) | Acidic
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0 • MIMAG.6.0
Biosamplemodel: Metagenome or environmental • MIMAG
Additional Accessions
SRR5247122
All retrieved samples
Metadata retrieved 13 days ago


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