JSON

Genome sc|0002365

Name

“Eremiobacter antarcticus”

Database

NCBI Assembly

Accession

GCA_003244105.1

Genomics

Accession
NCBI Assembly:GCA_003244105.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.07%
  • Contamination: 0.93%
  • Quality: 94.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 19.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
25.0 ×
Source
Other features
  • G+C Content: 62.58%
  • Coding Density: 92.37%
  • Codon Table: 11
  • N50: 214,289 bp
  • Contigs: 19
  • Largest Contig: 462,793 bp
  • Assembly Length: 2,635,737 bp
  • Ambiguous Assembly Fraction: 0.0041%
Submitter comments
MAG completeness and contamination were using CheckM (ver. 1.0.12).
rRNA genes assessed with Barrnap (ver. 0.9) with a 10% lenght rejection threshold (--reject 0.1)
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2005-12-13
Location
Lat Lon: 66.3695 S 110.5856 E
Toponym
Geo Loc Name: Antarctica:Robinson Ridge
Environment
Sample Type: metagenomic assembly
Isolation Source: pooled data from three different soil samples
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 13 days ago


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