Genome sc|0002365

Genomics

Accession

NCBI Assembly:GCA_003244105.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.07%
• Contamination: 0.93%
• Quality: 94.42

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 19.0%)
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

25.0 ×

Source

• BioSample: SAMN09209454
• BioSample: SAMN06286369
• And 2 more…

See all sources

Other features

• G+C Content: 62.5%
• Coding Density: 92.37%
• Codon Table: 11
• N50: 214,289 bp
• Contigs: 19
• Largest Contig: 462,793 bp
• Assembly Length: 2,635,737 bp
• Ambiguous Assembly Fraction: 0.0041%

Submitter comments

MAG completeness and contamination were using CheckM (ver. 1.0.12). rRNA genes assessed with Barrnap (ver. 0.9) with a 10% lenght rejection threshold (--reject 0.1)

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2005-12-13

Location

Lat Lon: 66.3695 S 110.5856 E • 66.369468 S 110.585626 E • 66.369451 S 110.585574 E • 66.369467 S 110.585574 E

Toponym

Geo Loc Name: Antarctica:Robinson Ridge

Environment

Env Material: soil

Sample Type: metagenomic assembly

Env Biome: desert

Isolation Source: pooled data from three different soil samples • soil

Other

Depth: 0-10 cm

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.soil.5.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil • Metagenome or environmental

All retrieved samples

• SAMN09209454: Microbe sample from Candidatus Eremiobacter sp. RRmetagenome_bin22
• SAMN06286369: MIMS Environmental/Metagenome sample from soil metagenome
• SAMN06286541: Metagenome or environmental sample from soil metagenome
• SAMN06286542: Metagenome or environmental sample from soil metagenome

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Metadata retrieved 18 days ago