Genome sc|0000267


Database

NCBI Assembly

Accession

GCA_947581645.1

Genomics

Accession
NCBI Assembly:GCA_947581645.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.15%
  • Contamination: 4.4%
  • Quality: 74.15
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 71.68%
  • Coding Density: 91.09%
  • Codon Table: 11
  • N50: 23,271 bp
  • Contigs: 199
  • Largest Contig: 95,544 bp
  • Assembly Length: 2,956,959 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-12-14
Location
Lat Lon: 17.951083 N 67.193167 W
Toponym
Geo Loc Name: Puerto Rico:Cabo Rojo, Puerto Rico
Environment
Isolation Source: Cabo Rojo, Puerto Rico
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Coastal | Sediment
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

SRR6201607


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