SeqCode Registry
cognitis nomina
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Genomes
sc|0000267
JSON
Genome sc|0000267
Name
Caribbeanibacter nitroreducens
Ts
Database
NCBI Assembly
Accession
GCA_947581645.1
Genomics
Accession
NCBI Assembly:
GCA_947581645.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.15%
Contamination:
4.4%
Quality:
74.15
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 20 amino acids
Source
SRA: SRR6201607
Other features
G+C Content:
71.68%
Coding Density:
91.09%
Codon Table:
11
N50:
23,271 bp
Contigs:
199
Largest Contig:
95,544 bp
Assembly Length:
2,956,959 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA
Automated checks
Complete
Last modified
3 months ago
Sample Metadata
BioSample entries
BioSample: SRS2617734
Date
Collection Date:
2011-12-14
Location
Lat Lon:
17.951083 N 67.193167 W
Toponym
Geo Loc Name:
Puerto Rico:Cabo Rojo, Puerto Rico
Environment
Isolation Source:
Cabo Rojo, Puerto Rico
Gold Ecosystem Classification:
Environmental | Aquatic | Marine | Coastal | Sediment
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SRS2617734
: Marine sediment microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1
Metadata retrieved
3 months ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS2617734
×
Metadata retrieved using the EBI API via SRR6201607 (linked through the EBI API)
BioSample Accession(s)
SRS2617734
collection_date
2011-12-14
INSDC secondary accession
SRS2617734
NCBI submission package
Metagenome.environmental.1.0
organism
marine metagenome
host
not applicable
geo_loc_name
Puerto Rico:Cabo Rojo, Puerto Rico
GOLD Ecosystem Classification
Environmental | Aquatic | Marine | Coastal | Sediment
lat_lon
17.951083 N 67.193167 W
isolation_source
Cabo Rojo, Puerto Rico
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-01-25
ENA-LAST-UPDATE
2022-10-21
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