JSON

Genome sc|0000271

Name

Not registered

Database

NCBI Assembly

Accession

GCA_001717015.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_001717015.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0% (automated estimate: 84.6%)
  • Contamination: 0.0% (automated estimate: 0.0%)
  • Quality: 100.0 (automated estimate: 84.6)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%) (automated estimate: 1)
  • 1 23S rRNA (up to 100.0%) (automated estimate: 1)
  • tRNAs for 20 amino acids (automated estimate: 17)
Source
Other features
  • G+C Content: 54.42% (automated estimate: 55.41%)
  • Coding Density: 89.95%
  • Codon Table: 11
  • N50: 20,171 bp
  • Contigs: 84
  • Largest Contig: 70,768 bp
  • Assembly Length: 1,268,545 bp
  • Ambiguous Assembly Fraction: 0.69%
Submitter comments
Genome quality including completeness and contamination was evaluated using CheckM. 16S and 23S rRNA sequences from MAGs were called using Barrnap v0.9. tRNAs were detected using tRNAscan-SE v.1.3.1.
Automated checks
Complete
Edit genome data
Last modified about 1 year ago


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