SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0002750
JSON
Genome sc|0002750
Database
NCBI Assembly
Accession
JBGGKV020000000
Genomics
Accession
NCBI Assembly:
JBGGKV020000000
Type
Isolate Genome
Sequencing depth
230.0 ×
Source
SRA: SRR30017328
Automated checks
Failed: Cannot find ncbi:assembly:JBGGKV020000000
Sample Metadata
Date
Collection Date:
2021-09-24
Location
Not detected
Toponym
Geo Loc Name:
USA: Nevada
Environment
Isolation Source:
Nasal Swabs
Other
Host:
Homo sapiens
Package
Ncbi Package:
SARS-CoV-2.cl.1.0
All retrieved samples
SRS22151213
: CDC Sars CoV2 Sequencing Baseline Constellation
Metadata retrieved
about 2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS22151213
×
Retrieved via SRR30017328
isolate
SARS-CoV-2/Human/USA/NV-CDC-QDX29079922/2021
collected_by
Quest Diagnostics Incorporated
collection_date
2021-09-24
isolation_source
Nasal Swabs
geo_loc_name
USA: Nevada
host
Homo sapiens
host_disease
COVID-19
host_sex
female
host_age
13
host_race
Unknown
collection_device
Nasal Swabs
collection_method
Nasal Swabs
purpose_of_sequencing
baseline surveillance (random sampling)
diagnostic_pcr_protocol_1
Hologic
diagnostic_pcr_Ct_value_1
Unknown
lineage/clade name
AY.4
ncbi_package
SARS-CoV-2.cl.1.0
Search
×
Names
Publications
Authors
Subjects