JSON

Genome sc|0002752

Name

“Australlarchaeum erebusii”

Database

NCBI Assembly

Accession

GCA_040290255.1

Genomics

Accession
NCBI Assembly:GCA_040290255.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.63%
  • Contamination: 1.94%
  • Quality: 85.93
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
158.0 ×
Source
See all sources
Other features
  • G+C Content: 63.6%
  • Coding Density: 93.04%
  • Codon Table: 11
  • N50: 358,302 bp
  • Contigs: 9
  • Largest Contig: 402,384 bp
  • Assembly Length: 1,213,694 bp
  • Ambiguous Assembly Fraction: 0.012%
Submitter comments
The organism represented by this MAG is the dominant organism in the geothermally heated soils at Tramway Ridge, Mt. Erebus. Metagenome data (SRR6519254) was assembled using SPAdes and coverage was determined across all four input SRA accessions. This MAG was binned using kmer+coverage in Metabat1 with the "sensitive" setting, which was determined to be the best according to dRep. CheckM1 and checkM2 were run on the MAG and the reported statistics are from checkM1. RNAs were identified and counted using PGAP through NCBI at the time of submission.  
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2009-02
Location
Geographic Location Latitude: -77.518383
Geographic Location Longitude: 167.111367
Toponym
Not detected
Environment
Environment Biome: terrestrial geothermal fumarole
Environment Feature: fumarole
Other
Ph: 8.35 • 8.52
Depth: 0.01 • 0.03
Temperature: 65
Package
Ena Checklist: ERC000021
All retrieved samples
Metadata retrieved 10 days ago


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