Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN16521242, SRS7606050

INSDC secondary accession

SRS7606050

organism

Ktedonobacter sp.

collection date

2011-02-13

isolation source

volcanic soil

env_broad_scale

soil biome

geo loc name

Chile: Melipeuco

metagenomic

1

derived-from

SRR12921514

environmental-sample

1

env_local_scale

volcanic soil 1957_MAG2

metagenome-source

soil metagenome

isolate

1957-MAG-2.1

NCBI submission package

MIMAG.6.0

depth

10 cm

lat lon

38.57 S 71.78 W

elev

800 masl

env_medium

volcanic soil 1957_MAG2

sample-type

metagenomic assembly

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2020-12-03

ENA-LAST-UPDATE

2024-04-19

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX9386060" alias="1957-MAG-2.1" center_name="SUB8417860" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX9386060</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB8417860">1957-MAG-2.1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>MAG-1957-2.1</TITLE>
  <STUDY_REF accession="SRP252026">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP252026</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA602601</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>MiSeq</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS7606050">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS7606050</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN16521242</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>1957-MAG-2.1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS7606050</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1149451</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9386060&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9386060&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>