SeqCode Registry
cognitis nomina
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Genomes
sc|0000305
JSON
Genome sc|0000305
Name
“Latescibacter anaerobius”
Database
NCBI Assembly
Accession
GCA_000403035.1
Genomics
Accession
NCBI Assembly:
GCA_000403035.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
Completeness:
57.63%
Contamination:
1.1%
Quality:
52.13
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 1.0%)
tRNAs for 17 amino acids
Source
BioSample: SAMN02441742
Other features
G+C Content:
42.12%
Coding Density:
85.25%
Codon Table:
11
N50:
24,533 bp
Contigs:
164
Largest Contig:
75,516 bp
Assembly Length:
2,290,285 bp
Ambiguous Assembly Fraction:
0.0018%
Submitter comments
Quality metrics are from GTDB
https://gtdb.ecogenomic.org/genome?gid=GCA_000403035.1
Automated checks
Complete
Sample Metadata
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
Generic.1.0
Biosamplemodel:
Generic
All retrieved samples
SAMN02441742
: Generic sample from Latescibacteria bacterium SCGC AAA252-E07
Metadata retrieved
3 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN02441742
×
strain
SCGC AAA252-E07
alt_elev
Missing
collection_date
Missing
country
USA
isol_growth_condt
Missing
note
single cell isolate
ref_biomaterial
Missing
INSDC secondary accession
SRS1584665
rel_to_oxygen
Missing
organism
Candidatus Latescibacter anaerobius SCGC AAA252-E07
biotic_relationship
Missing
project_name
candidate division WS3 bacterium SCGC AAA252-E07
Source of Isolate
brackish water
Type Strain
No
environment
Fresh water; Aquatic
Isolation Comments
Single Cell
NCBI submission package
Generic.1.0
Isolation Site
Sakinaw Lake
trophic_level
Missing
lat_lon
Missing
BioSampleModel
Generic
ENA-FIRST-PUBLIC
2013-12-11
ENA-LAST-UPDATE
2016-07-26
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