Genome sc|0003068


Database

NCBI Assembly

Accession

GCA_002423485.1

Genomics

Accession
NCBI Assembly:GCA_002423485.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.79%
  • Contamination: 4.68%
  • Quality: 73.39
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
29.4 ×
Source
Other features
  • G+C Content: 67.5%
  • Coding Density: 91.22%
  • Codon Table: 11
  • N50: 82,137 bp
  • Contigs: 88
  • Largest Contig: 224,259 bp
  • Assembly Length: 4,705,588 bp
  • Ambiguous Assembly Fraction: 0.032%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-07-21
Location
Lat Lon: 57.057175 N 111.599946 W
Toponym
Geo Loc Name: Canada: Syncrude tailings pond, Wood Buffalo, Alberta
Environment
Sample Type: metagenomic assembly
Isolation Source: waste water
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0MIMS.me.wastewater.5.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.wastewater
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

bacterium UBP9_UBA6111
Toluene 454:Toluene degrading microbial community from hydrocarbon contaminated site


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license