JSON

Genome sc|0003093

Name

Meridianibacter frigidusTs

Database

NCBI Assembly

Accession

GCA_003243975.1

Genomics

Accession
NCBI Assembly:GCA_003243975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.17%
  • Contamination: 0.09%
  • Quality: 95.72
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 26.0%)
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
27.0 ×
Source
Other features
  • G+C Content: 60.0%
  • Coding Density: 94.23%
  • Codon Table: 11
  • N50: 74,679 bp
  • Contigs: 43
  • Largest Contig: 196,487 bp
  • Assembly Length: 1,949,983 bp
  • Ambiguous Assembly Fraction: 0.0036%
Automated checks
Complete
Last modified over 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2005-12-13
Location
Lat Lon: 66° 22′ 10″ S, 110° 35′ 8.2″ E • 66° 22′ 10″ S, 110° 35′ 8.2″ E • 66° 22′ 10″ S, 110° 35′ 8.1″ E • 66° 22′ 10″ S, 110° 35′ 8.1″ E
View map of sampling locations
Toponym
Geo Loc Name: Antarctica:Robinson Ridge
Environment
Env Material: soil
Sample Type: metagenomic assembly
Env Biome: desert
Isolation Source: pooled data from three different soil samples • soil
Other
Depth: 0-10 cm
Package
Ncbi Submission Package: Microbe.1.0 • MIMS.me.soil.5.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil • Metagenome or environmental
All retrieved samples
Metadata retrieved over 1 year ago


© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:tgimo_87