Keywords: GSC:MIxS;MIGS:6.0

BioSample Accession(s)

SAMN40923435

strain

HIMB1674

collection_date

2017-07-26

isol_growth_condt

https://www.biorxiv.org/content/10.1101/2024.03.17.584874v1

ref_biomaterial

https://www.biorxiv.org/content/10.1101/2024.03.17.584874v1

organism

SAR86 cluster bacterium HIMB1674

env_broad_scale

aquatic

env_local_scale

marine

NCBI submission package

MIGS.ba.water.6.0

depth

2 meters

num_replicons

1

geo_loc_name

Pacific Ocean: Oahu, Kaneohe Bay

env_medium

surface seawater

lat_lon

21.43635 N 157.77736666 W

isolation_source

surface seawater

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2024-09-08

ENA-LAST-UPDATE

2024-09-08

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX30566406" alias="HIMB1674" center_name="SUB15645648" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX30566406</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15645648">HIMB1674</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Genome sequencing of SAR86 cluster bacterium HIMB1674 from surface seawater</TITLE>
  <STUDY_REF accession="SRP621415">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP621415</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1098794</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA was extracted from cultures using the Qiagen Blood and Tissue DNA kit followed by Nextera library prep following guidelines for low input samples and sequenced at what is now SeqCenter in Pittsburgh, PA USA</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS26596350">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS26596350</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN40923435</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>HIMB1674</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS26596350</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2225248</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX30566406&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX30566406&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>