Genome sc|0003099

Genomics

Accession

NCBI Assembly:GCA_041946755.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.14%
• Contamination: 0.71%
• Quality: 91.59

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

10.0 ×

Source

• SRA: SRX24824455

Other features

• G+C Content: 41.2%
• Coding Density: 87.92%
• Codon Table: 11
• N50: 15,106 bp
• Contigs: 362
• Largest Contig: 55,311 bp
• Assembly Length: 3,901,861 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed using checkM2. rRNAs were annotated using barnap, however it was not possible to identify the 16S or 23S rRNA genes.

Automated checks

Complete

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Last modified about 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN41673585

Date

Collection Date: 2018-04-19

Location

Lat Lon: 22.21518073 S 50.65283493 W

Toponym

Geo Loc Name: Brazil

Environment

Isolation Source: sugarcane bagasse soil; 200mm depth

Env Broad Scale: Atlantic Rain Forest

Env Local Scale: soil

Env Medium: field soil

Other

Depth: 200mm

Package

Ncbi Package: MIMS.me.soil.6.0

All retrieved samples

• SAMN41673585: Sugarcane Bagasse Soil

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Metadata retrieved about 2 months ago