This sample represents a MAG derived from the metagenomic sample SAMEA6511919

assembly software

metaSPAdes 3.13.0

environment (material)

fresh water

collection date

2018-10-17

sample derived from

SAMEA6511919

geographic location (longitude)

8.4924

binning parameters

Genome represented by a single contig.

contamination score

0

ENA-FIRST-PUBLIC

2020-06-14

ENA-LAST-UPDATE

2020-02-28

completeness software

Closed complete genome

environment (biome)

freshwater lake biome

environment (feature)

lake

geographic location (country and/or sea)

Switzerland

ENA-CHECKLIST

ERC000047

binning software

NA

organism

endosymbiont of Plagiopylea sp.

assembly quality

Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

taxonomic identity marker

16S rRNA gene

completeness score

100

geographic location (latitude)

47.1008

scientific_name

endosymbiont of Plagiopylea sp.

investigation type

metagenome-assembled genome

metagenomic source

freshwater metagenome

project name

Azoamicus ciliaticola MAG

sequencing method

Illumina HiSeq 2500

isolation_source

Water from

Freshwater sample from anoxic hypolimnion of Lake Zug (180 m water depth)

geographic location (depth)

180

ENA-CHECKLIST

ERC000024

environment (material)

fresh water [ENVO:00002011]

submitted to insdc

true

organism

freshwater metagenome

environmental package

water

collection date

2018-10-17

geographic location (longitude)

8.4924

geographic location (latitude)

47.1008

scientific_name

freshwater metagenome

investigation type

metagenome

water environmental package

water

ENA-FIRST-PUBLIC

2020-11-10

project name

Metagenomic and metatranscriptomic sequencing of water from the anoxic hypolimnion of a freshwater lake

sequencing method

Illumina HiSeq 2500

ENA-LAST-UPDATE

2020-01-30

environment (biome)

freshwater lake biome [ENVO:01000252]

environment (feature)

microbial feature [ENVO:01000007]

geographic location (country and/or sea)

Switzerland

Metadata as EBI XML

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    <PRIMARY_ID>ERX3868864</PRIMARY_ID>
    <SUBMITTER_ID namespace="German Federation for Biological Data">25368:e5ea7892-8ab4-4264-a247-e00abfc47a0b</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP119702">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP119702</PRIMARY_ID>
      <SECONDARY_ID>PRJEB36502</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS4276345">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4276345</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6511919</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED NOMINAL_LENGTH="450"/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
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