Genome sc|0003100


Database

NCBI Assembly

Accession

GCF_902860225.1

Genomics

Accession
NCBI Assembly:GCF_902860225.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
57.0 ×
Source
Other features
  • G+C Content: 24.5%
  • Coding Density: 94.08%
  • Codon Table: 11
  • N50: 292,520 bp
  • Contigs: 1
  • Largest Contig: 292,520 bp
  • Assembly Length: 292,520 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Circular endosymbiont genome. Completeness and contamination based on the circularity, not marker gene content
Automated checks
Complete

Last modified 26 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-10-17
Location
Geographic Location Latitude: 47.1008
Geographic Location Longitude: 8.4924
Toponym
Geographic Location Country And Or Sea: Switzerland
Environment
Isolation Source: Water from
Environment Biome: freshwater lake biome • freshwater lake biome [ENVO:01000252]
Environment Feature: lake • microbial feature [ENVO:01000007]
Other
Geographic Location Depth: 180
Package
Ena Checklist: ERC000047ERC000024
All retrieved samples

Metadata retrieved 26 days ago

Sequencing Experiments

Illumina HiSeq 2500 paired end sequencing


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