This BioSample is a metagenomic assembly obtained from the echinoderm (deep-sea crinoid) metagenome BioSample: SAMN36307641.

BioSample Accession(s)

SAMN36350527, ERS16882243

collection_date

2021-09

NCBI submission package

MIMS.me.host-associated.6.0

organism

echinoderm metagenome

isolation-source

deep sea crinoid

env_broad_scale

Marine | Deep-sea

host

Koehlermetra sp.

geo_loc_name

Brazil: Campos Basin, Rio de Janeiro

env_medium

Marine

lat_lon

22.39 S 40.26 W

env_local_scale

Crinoid

BioSampleModel

MIGS/MIMS/MIMARKS.host-associated

ENA-FIRST-PUBLIC

2023-07-07

ENA-LAST-UPDATE

2023-09-18

Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN36307641, SRS23296953

collection_date

2021-09

INSDC secondary accession

SRS23296953

organism

Endozoicomonas sp.

isolation-source

deep sea crinoid

env_broad_scale

Marine | Deep-sea

metagenomic

1

environmental-sample

1

env_local_scale

Crinoid

metagenome-source

echinoderm metagenome

isolate

MAGCC1

NCBI submission package

MIMAG.symbiont-associated.6.0

host

Koehlermetra sp.

geo_loc_name

Brazil: Campos Basin, Rio de Janeiro

host_life_stage

adult

host_dependence

obligate

env_medium

Marine

lat_lon

22.39 S 40.26 W

sym_life_cycle_type

complex life cycle

sample-type

metagenomic assembly

sample derived-from

SAMN36350527

BioSampleModel

MIMAG.symbiont-associated

ENA-FIRST-PUBLIC

2023-07-12

ENA-LAST-UPDATE

2024-11-22

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX26812303" alias="C119" center_name="SUB14883285" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX26812303</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14883285">C119</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Crinoid Raw Metagenome</TITLE>
  <STUDY_REF accession="SRP447969">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP447969</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA991147</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Library prep: Illumina Stranded mRNA Prep Ligation (fragmentation, 1 ng input, 15 PCR cycles). Indexed: IDT RNA UD Indexes. QC: Qubit (dsDNA HS), GX Touch HT (HS DNA). Sequencing: NovaSeq X Plus (2  150 bp).</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS23296953">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS23296953</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN36307641</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>C119</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>PCR</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq X Plus</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS23296953</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2019820</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX26812303&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX26812303&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>