Genome sc|0003119

Genomics

Accession

NCBI Assembly:GCA_031844845.2

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.17%
• Contamination: 2.87%
• Quality: 81.82

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

15.0 ×

Source

• BioSample: SAMN36350527
• BioSample: SRS23296953

Other features

• G+C Content: 47.42%
• Coding Density: 83.06%
• Codon Table: 11
• N50: 17,449 bp
• Contigs: 440
• Largest Contig: 74,740 bp
• Assembly Length: 5,372,908 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 1 day ago

Sample Metadata

BioSample entries

• BioSample: SAMN36350527
• BioSample: SRS23296953

Date

Collection Date: 2021-09

Location

Lat Lon: 22.39 S 40.26 W

Toponym

Geo Loc Name: Brazil: Campos Basin, Rio de Janeiro

Environment

Sample Type: metagenomic assembly

Isolation Source: deep sea crinoid

Env Broad Scale: Marine | Deep-sea

Env Local Scale: Crinoid

Env Medium: Marine

Other

Host: Koehlermetra sp.

Package

Ncbi Submission Package: MIMS.me.host-associated.6.0 • MIMAG.symbiont-associated.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated • MIMAG.symbiont-associated

All retrieved samples

• SAMN36350527: MIMS Environmental/Metagenome sample from echinoderm metagenome
• SRS23296953: MIMAG Metagenome-assembled Genome sample from Endozoicomonas sp.

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Metadata retrieved 1 day ago