Genome sc|0003122

Genomics

Accession

NCBI Assembly:GCA_018656005.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.93%
• Contamination: 0.0%
• Quality: 91.93

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 95.0157728706625%)
• 1 23S rRNA (up to 94.7710396039604%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN14914634
• BioSample: SAMN14850023

Other features

• G+C Content: 32.67%
• Coding Density: 91.42%
• Codon Table: 11
• N50: 33,488 bp
• Contigs: 62
• Largest Contig: 81,046 bp
• Assembly Length: 1,201,473 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN14914634
• BioSample: SAMN14850023

Date

Collection Date: 2010-07-07

Location

Lat Lon: 48.36 N 123.30 W

Toponym

Geo Loc Name: Canada: Vancouver, Saanich Inlet

Environment

Sample Type: metagenomic assembly

Isolation Source: hypoxic seawater

Env Broad Scale: marine biome [ENVO:00000447]

Env Local Scale: fjord [ENVO:00000039]

Env Medium: hypoxic water [ENVO:01001064]

Other

Depth: 100-200 m

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.water.5.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.water

All retrieved samples

• SAMN14914634: Metagenome-Assembled Genomes from Saanich Inlet seawaters
• SAMN14850023: Primary assemblies used to reconstruct MAGs from Saanich Inlet SI047_S3 metagenomes

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Metadata retrieved 2 months ago