SeqCode Registry
cognitis nomina
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Genomes
sc|0003139
JSON
Genome sc|0003139
Database
NCBI Assembly
Accession
GCA_002437085.1
Genomics
Accession
NCBI Assembly:
GCA_002437085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.63%
(automated estimate: 94.3%)
Contamination:
0.0%
(automated estimate: 0.0%)
Quality:
96.63
(automated estimate: 94.3)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 95.14195584%)
(automated estimate: 0)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 19 amino acids
(automated estimate: 20)
Sequencing depth
15.9 ×
Source
BioSample: SAMN06451545
Other features
G+C Content:
48.99%
(automated estimate: 48.89%)
Coding Density:
90.37%
Codon Table:
11
N50:
50,891 bp
Contigs:
54
Largest Contig:
108,824 bp
Assembly Length:
1,573,349 bp
Ambiguous Assembly Fraction:
0.2%
Automated checks
Complete
Last modified
12 days ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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