Genome sc|0003159


Database

NCBI Assembly

Accession

GCA_021163445.1

Genomics

Accession
NCBI Assembly:GCA_021163445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.86%
  • Contamination: 0.29%
  • Quality: 89.41
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 30.0%)
  • tRNAs for 21 amino acids
Sequencing depth
19.0 ×
Source
Other features
  • G+C Content: 46.0%
  • Coding Density: 87.93%
  • Codon Table: 11
  • N50: 11,007 bp
  • Contigs: 363
  • Largest Contig: 38,684 bp
  • Assembly Length: 3,104,799 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
quality metrics based on CheckM2, as run by the GTDB 
Automated checks
Complete

Last modified over 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-04-18
Location
Lat Lon: 23° 57′ 25″ N, 108° 51′ 44″ W
View map of sampling locations
Toponym
Geo Loc Name: Pacific Ocean: Mexico, Pescadero Basin
Environment
Env Broad Scale: hydrothermal vent field
Env Local Scale: marine hydrothermal vent
Env Medium: marine sediment
Other
Depth: 7-14cm • 0-7cm
Package
Ncbi Submission Package: MIMS.me.sediment.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples

Metadata retrieved over 1 year ago

Sequencing Experiments

SRR14000031
SRR14000032
SRR14000033
SRR14000034
SRR14000035
SRR14000036
SRR14000037
SRR14000038
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California
Metagenomic sequencing of marine sediment from Auka hydrothermal vent field in Pescadero Basin, Gulf of California


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