JSON

Genome sc|0003174

Name

Not registered

Database

INSDC Nucleotide

Accession

CP176393.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:CP176393.1
Cultures
Strain sc|0040398
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 2.8%
  • Quality: 85.1
Ribosomal and transfer RNA genes
  • 5 16S rRNAs (up to 100.0%)
  • 5 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
101.0 ×
Source
Other features
  • G+C Content: 50.17%
  • Coding Density: 82.81%
  • Codon Table: 11
  • N50: 2,425,940 bp
  • Contigs: 1
  • Largest Contig: 2,425,940 bp
  • Assembly Length: 2,425,940 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Edit genome data
Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2024-06
Location
Lat Lon: 43° 39′ 33″ N, 79° 23′ 44″ W
View map of sampling locations
Toponym
Geo Loc Name: Canada: Toronto
Environment
Env Broad Scale: Bioreactor
Env Local Scale: Anaerobic CSTR
Env Medium: Food waste
Other
Isol Growth Condt: DSMZ medium 104 with Lactate at 37C
Package
Ncbi Submission Package: MIGS.ba.food-human_foods.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.food-human_foods
All retrieved samples
Metadata retrieved 2 months ago


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