Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN42748166, ERS22556195

collection_date

2019

organism

Candidatus Pseudothioglobus sp.

env_broad_scale

Sea Water

metagenomic

1

label

Gamma_d05 Pseudothioglobus notiaecoris

environmental-sample

1

env_local_scale

Sea Water

metagenome-source

seawater metagenome

isolate

MAG_d05

NCBI submission package

MIMAG.6.0

depth

2600m

geo_loc_name

Southern Ocean

env_medium

Sea Water

lat_lon

51.400 S 0.001 E

isolation_source

Sea water

sample-type

metagenomic assembly

sample derived-from

SAMN44843570

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2024-10-11

ENA-LAST-UPDATE

2024-12-06

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX27298999" alias="MAG_d05: 20082D-04-11_S6_L003" center_name="SUB14994665" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX27298999</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14994665">MAG_d05: 20082D-04-11_S6_L003</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Shotgun:Southern Ocean:Marine</TITLE>
  <STUDY_REF accession="SRP556291">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP556291</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1138941</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>NA</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS23740822">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS23740822</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN42748166</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>MAG_d05: 20082D-04-14_S8_L003</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS23740822</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2047984</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX27298999&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX27298999&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>