Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN42748165, ERS22556194

collection_date

2019

organism

SAR86 cluster bacterium

env_broad_scale

Sea Water

metagenomic

1

label

Gamma_525 Oceanirimans austrimarmus

environmental-sample

1

env_local_scale

Sea Water

metagenome-source

seawater metagenome

isolate

MAG_525

NCBI submission package

MIMAG.6.0

depth

500m

geo_loc_name

Southern Ocean

env_medium

Sea Water

lat_lon

38.59913 S 11.80077 E

isolation_source

Sea water

sample-type

metagenomic assembly

sample derived-from

SAMN44843569

BioSampleModel

MIMAG

ENA-FIRST-PUBLIC

2024-10-11

ENA-LAST-UPDATE

2024-12-06

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX27300173" alias="525: 20082D-04-48_S29_L003" center_name="SUB14999438" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX27300173</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14999438">525: 20082D-04-48_S29_L003</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Shotgun:Southern Ocean:Marine</TITLE>
  <STUDY_REF accession="SRP556291">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP556291</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1138941</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>NA</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS23741997">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS23741997</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN42748165</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>525: 20082D-04-48_S29_L003</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS23741997</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2048116</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX27300173&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX27300173&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>