Genome sc|0003230

Genomics

Accession

NCBI Assembly:GCA_027342395.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 98.0% (automated estimate: 95.3%)
• Contamination: 2.0% (automated estimate: 1.9%)
• Quality: 88.0 (automated estimate: 85.8)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 80.0%) (automated estimate: 1)
• 1 23S rRNA (up to 90.0%) (automated estimate: 1)
• tRNAs for 19 amino acids (automated estimate: 19)

Sequencing depth

20.0 ×

Source

• BioSample: SRR27730049

Other features

• G+C Content: 70.0% (automated estimate: 73.3%)
• Coding Density: 92.06%
• Codon Table: 11
• N50: 20,903 bp
• Contigs: 190
• Largest Contig: 104,468 bp
• Assembly Length: 2,353,669 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

 | The quality of the metagenome-assembled genomes (MAGs) was estimated using CheckM2 v1.0.2. Potential 5S, 16S, and 23S rRNA genes within each MAG were identified using barrnap v0.9 (https://github.com/tseemann/barrnap).  The number of potential tRNA genes within the genomes was assessed using Prokka v1.14.

Automated checks

Complete

Edit genome data

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Last modified about 4 hours ago

Sample Metadata

BioSample entries

• BioSample: SRR27730049

Date

Collection Date: not available

Location

Lat Lon: 5.931 N 73.304 W

Toponym

Geo Loc Name: Colombia:Gambita

Environment

Isolation Source: decomposition metagenome

Env Broad Scale: ENVO:00002261

Env Local Scale: ENVO:00002261

Env Medium: ENVO:00001998

Other

Not detected

Package

Ncbi Submission Package: MIMAG.5.0

Biosamplemodel: MIMAG

Additional Accessions

SAMN28657967, SAMN28657968, SAMN28657969 Append as BioSamples

All retrieved samples

• SAMN28659477: MIMAG Metagenome-assembled Genome sample from Bacillaceae bacterium

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Metadata retrieved about 5 hours ago (queued for update about 5 hours ago)