BioSample Accession(s)

SRS20256785

collection_date

2018-08

INSDC secondary accession

SRS20256785

NCBI submission package

Metagenome.environmental.1.0

organism

hot springs metagenome

geo_loc_name

China: Tengchong, Yunnan

lat_lon

24.92 N 98.34 E

isolation_source

BF3

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2023-05-18

ENA-LAST-UPDATE

2024-01-25

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR27730049" alias="BF3_201808_1.fq.gz" center_name="SUB14155362" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR27730049</PRIMARY_ID>
    <SUBMITTER_ID label="1" namespace="SUB14155362">BF3_201808_1.fq.gz</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>HiSeq X Ten paired end sequencing; BF3_201808_metagenomics</TITLE>
  <EXPERIMENT_REF accession="SRX23395852">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23395852</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB14155362">2024011702</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1788749</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP485978</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20256785</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR27730049&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR27730049&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2024-01-28</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2024-02-02</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX23395852" alias="2024011702" center_name="SUB14155362" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX23395852</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14155362">2024011702</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>BF3_201808_metagenomics</TITLE>
  <STUDY_REF accession="SRP485978">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP485978</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA973840</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>metagenomic sequencing of sediment sample from hot spring</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS20256785">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS20256785</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN35165513</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>2024011702</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>size fractionation</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>HiSeq X Ten</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS20256785</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1788749</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23395852&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX23395852&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>