Genome sc|0000327

Genomics

Accession

INSDC Nucleotide:CP119318.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.97%
• Contamination: 0.03%
• Quality: 93.82

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 100.0%)
• 3 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

20.0 ×

Source

• BioSample: SAMN33481874
• BioSample: SAMN33438288

Other features

• G+C Content: 65.55%
• Coding Density: 86.0%
• Codon Table: 11
• N50: 4,946,730 bp
• Contigs: 1
• Largest Contig: 4,946,730 bp
• Assembly Length: 4,946,730 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.

Automated checks

Complete

---

Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN33481874
• BioSample: SAMN33438288

Date

Collection Date: not available

Location

Lat Lon: 5.931 N 73.304 W

Toponym

Geo Loc Name: Colombia:Gambita

Environment

Isolation Source: decomposition metagenome • soil

Env Broad Scale: ENVO:00002261

Env Local Scale: ENVO:00002261

Env Medium: ENVO:00001998

Other

Not detected

Package

Ncbi Submission Package: MIMAG.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG • Metagenome or environmental

Additional Accessions

This BioSample is a metagenomic assembly obtained from the decomposition metagenome BioSamples SAMN33438288-90

All retrieved samples

• SAMN33481874: MIMAG Metagenome-assembled Genome sample from Kaistia sp.
• SAMN33438288: Metagenome or environmental sample from decomposition metagenome

---

Metadata retrieved 2 months ago