SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0000329
JSON
Genome sc|0000329
Name
Sphingomonas phytovorans
Database
INSDC Nucleotide
Accession
CP119314.1
Genomics
Accession
INSDC Nucleotide:
CP119314.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
99.3%
Contamination:
2.45%
Quality:
87.05
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
BioSample: SAMN33481878
BioSample: SAMN33438288
Other features
G+C Content:
65.05%
Coding Density:
90.1%
Codon Table:
11
N50:
5,454,146 bp
Contigs:
1
Largest Contig:
5,454,146 bp
Assembly Length:
5,454,146 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.
Automated checks
Complete
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
Search
×
Names
Publications
Authors
Subjects