SeqCode Registry
cognitis nomina
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Genomes
sc|0000335
JSON
Genome sc|0000335
Name
Pseudomonas phytovorans
Database
INSDC Nucleotide
Accession
CP119325.1
Genomics
Accession
INSDC Nucleotide:
CP119325.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
99.36%
Contamination:
3.06%
Quality:
84.06
Ribosomal and transfer RNA genes
7 16S rRNAs (up to 100.0%)
7 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
20.0 ×
Source
BioSample: SAMN33481883
BioSample: SAMN33438288
Other features
G+C Content:
62.0%
Coding Density:
89.22%
Codon Table:
11
N50:
6,226,488 bp
Contigs:
1
Largest Contig:
6,226,488 bp
Assembly Length:
6,226,488 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Dfast was used to identify rRNA genes. Completion and contamination were estimated by CheckM.
Automated checks
Complete
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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