Genome sc|0000344


Name

Not registered

Database

NCBI Assembly

Accession

JARLUB000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:JARLUB000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.0%
  • Contamination: 0.0%
  • Quality: 95.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12000.0 ×
Source
Other features
  • G+C Content: 33.1%
Submitter comments
The completeness was estimated using GTDB-tk. All other values are derived from automatic annotation using Prokka. The genome was assembled from the single-cell metagenome of Pelomyxa schiedti and the organism is an endosymbiont of P. schiedti.
Automated checks
Failed: Cannot find ncbi:assembly:JARLUB000000000

Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-07-31
Location
Lat Lon: 42° 2′ 44″ N, 19° 29′ 22″ E
View map of sampling locations
Toponym
Geo Loc Name: Albania: Lake Skadar
Environment
Sample Type: single cell
Isolation Source: single cell amplified by MDA; freshwater hypoxic sediments
Other
Depth: 0.5 m
Temp: room temperature
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples

Metadata retrieved 4 months ago

Sequencing Experiments

DNA-Seq of Pelomyxa schiedti, single cell
RNA-Seq of Pelomyxa schiedti, single cell
RNA-Seq of Pelomyxa schiedti, single cell
RNA-Seq of Pelomyxa schiedti, single cell
RNA-Seq of Pelomyxa schiedti, single cell
RNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell
DNA-Seq of Pelomyxa schiedti, single cell


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