JSON

Genome sc|0003507

Name

“Agrobacterium bohemicum”

Database

NCBI Assembly

Accession

GCF_002896715.1

Genomics

Accession
NCBI Assembly:GCF_002896715.1
Cultures
Strain sc|0038872
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: -0.1%
  • Quality: 97.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
85.0 ×
Source
Other features
  • G+C Content: 56.2%
  • Coding Density: 88.59%
  • Codon Table: 11
  • N50: 344,460 bp
  • Contigs: 30
  • Largest Contig: 835,148 bp
  • Assembly Length: 4,713,153 bp
  • Ambiguous Assembly Fraction: 0.16%
Submitter comments
Estimated contamination and completeness determined using CheckM, all other analyses performed on MiGA Gateway.
Automated checks
Complete
Last modified 21 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-06-13
Location
Lat Lon: 50° 15′ 34″ N, 14° 29′ 7.6″ E
View sampling location map
Toponym
Geo Loc Name: Czech Republic:Nerartovice
Environment
Sample Type: Soil contaminated by poppy wastes
Isolation Source: soil contaminated by poppy wastes
Other
Depth: -15 cm
Temp: 17
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 21 days ago


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