Genome sc|0003512

Genomics

Accession

NCBI Assembly:GCF_021168455.1

Cultures

Strain sc|0038877

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 98.1%
• Contamination: 0.9%
• Quality: 93.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 99.0%)
• tRNAs for 19 amino acids

Sequencing depth

150.0 ×

Source

• BioSample: SAMN23555605

Other features

• G+C Content: 64.5%
• Coding Density: 87.91%
• Codon Table: 11
• N50: 330,360 bp
• Contigs: 36
• Largest Contig: 825,772 bp
• Assembly Length: 4,992,978 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 14 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN23555605

Date

Collection Date: 2019-08

Location

Lat Lon: 28° 3′ 36″ N, 107° 1′ 12″ E

View sampling location map

Toponym

Geo Loc Name: China:Guizhou

Environment

Isolation Source: oak leaf

Env Broad Scale: oak forest

Env Local Scale: forestland

Env Medium: oak leaf

Other

Host: oak

Isol Growth Condt: NA plate30 two days, grow well

Package

Ncbi Submission Package: MIGS.ba.plant-associated.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.plant-associated

All retrieved samples

• SAMN23555605: MIGS Cultured Bacterial/Archaeal sample from Rhizobium quercicola

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Metadata retrieved 14 days ago