JSON

Genome sc|0003516

Name

“Rhizobium deserti”

Database

NCBI Assembly

Accession

GCF_004358025.1

Genomics

Accession
NCBI Assembly:GCF_004358025.1
Cultures
Strain sc|0038881
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 0.9%
  • Quality: 93.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 60.0%
  • Coding Density: 88.26%
  • Codon Table: 11
  • N50: 1,157,938 bp
  • Contigs: 29
  • Largest Contig: 1,341,936 bp
  • Assembly Length: 4,747,674 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 13 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-11
Location
Not detected
Toponym
Geo Loc Name: China: Mu Us Desert
Environment
Sample Type: pure culture
Isolation Source: soil
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 13 days ago


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