JSON

Genome sc|0003526

Name

“Rhizobium indicum”

Database

NCBI Assembly

Accession

GCA_005862305.2

Genomics

Accession
NCBI Assembly:GCA_005862305.2
Cultures
Strain sc|0038890
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 3.8%
  • Quality: 80.1
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
91.0 ×
Source
Other features
  • G+C Content: 60.8%
  • Coding Density: 86.91%
  • Codon Table: 11
  • N50: 5,030,384 bp
  • Contigs: 6
  • Largest Contig: 5,030,384 bp
  • Assembly Length: 7,533,049 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 19 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-09-14
Location
Lat Lon: 34° 6′ 45″ N, 78° 6′ 40″ E
View sampling location map
Toponym
Geo Loc Name: India: Durbuk Village, Leh
Environment
Sample Type: Pure culture
Isolation Source: pea root nodules
Env Broad Scale: pea root nodulating and nitrogen-fixing bacteria
Other
Host: Pisum sativum l. (pea)
Temp: 28 C
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 19 days ago


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