JSON

Genome sc|0003531

Name

“Leucobacter nanjingensis”

Database

NCBI Assembly

Accession

GCA_048516985.1

Genomics

Accession
NCBI Assembly:GCA_048516985.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.71%
  • Contamination: 0.56%
  • Quality: 95.91
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.32%
  • Coding Density: 89.99%
  • Codon Table: 11
  • N50: 2,882,312 bp
  • Contigs: 1
  • Largest Contig: 2,882,312 bp
  • Assembly Length: 2,882,312 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The genome quality was assessed with CheckM2. The gene function was annotated with bakta using default settings.

Reference
Check2: Chklovski A, Parks DH, Woodcroft BJ et al. CheckM2: A rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 2023;20:1203−12. https://doi.org/10.1038/s41592-023-01940-w.
bakta: Schwengers O, Jelonek L, Dieckmann MA et al. Bakta: Rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Microb Genomics 2021;7 https://doi.org/10.1099/mgen.0.000685.

Automated checks
Complete
Last modified 19 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021
Location
Lat Lon: 32° 30′ 36″ N, 119° 1′ 12″ E
View sampling location map
Toponym
Geo Loc Name: China: Nanjing
Environment
Isolation Source: a sulfadiazine-contaminating dairy farm soil
Other
Rel To Oxygen: aerobe
Package
All retrieved samples
Metadata retrieved 19 days ago

Sequencing Experiments

SRR32378813


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license