JSON

Genome sc|0003532

Name

Not registered

Database

INSDC Nucleotide

Accession

GCA_048161455.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:GCA_048161455.1
Cultures
Strain sc|0038896
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.02%
  • Quality: 99.9
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 72.0%
Submitter comments
The genome quality was assessed with CheckM2. The gene function was annotated with bakta using default settings.

Reference
Check2: Chklovski A, Parks DH, Woodcroft BJ et al. CheckM2: A rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 2023;20:1203−12. https://doi.org/10.1038/s41592-023-01940-w.
bakta: Schwengers O, Jelonek L, Dieckmann MA et al. Bakta: Rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Microb Genomics 2021;7 https://doi.org/10.1099/mgen.0.000685.
Automated checks
Failed: Cannot find ncbi:nuccore:GCA_048161455.1
Edit genome data
Last modified 24 days ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved 24 days ago


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