BioSample Accession(s)

SRS24455592

strain

T5

collection_date

2021

isolate

A investigation for 2-aminopyrimidine degrading strain by Qilin WANG

INSDC secondary accession

SRS24455592

NCBI submission package

Microbe.1.0

organism

Nocardioides

geo_loc_name

China: Nanjing

sample_type

cell culture

isolation_source

A sulfadiazine-contaminated dairy farm soil sample

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2025-03-22

ENA-LAST-UPDATE

2025-03-22

BioSample Accession(s)

SRS24455581

strain

T5

collection_date

2021

isolate

A investigation for 2-aminopyrimidine degrading strain by Qilin WANG

INSDC secondary accession

SRS24455581

NCBI submission package

Microbe.1.0

organism

Nocardioides

geo_loc_name

China: Nanjing

sample_type

cell culture

isolation_source

a sulfadiazine-contaminated dairy farmland soil

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2025-03-22

ENA-LAST-UPDATE

2025-03-22

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX28098654" alias="T5_genome_Nanopore_RawData" center_name="SUB15193664" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX28098654</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15193664">T5_genome_Nanopore_RawData</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>WGS of Nocardioides nanjingensis T5: cell culture</TITLE>
  <STUDY_REF accession="SRP564555">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP564555</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1207952</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Missing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS24455592">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS24455592</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|qilin.julius.wang@hotmail.com">Whole genome sequencing of Nocardioides nanjingensis T5 - Nanopore RawData</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>T5_genome_Nanopore_RawData</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS24455592</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2098292</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX28098654&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX28098654&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX28098643" alias="T5_G2" center_name="SUB15193638" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX28098643</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB15193638">T5_G2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>WGS of Nocardioides nanjingensis T5: cell culture</TITLE>
  <STUDY_REF accession="SRP564555">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP564555</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1207952</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>missing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS24455581">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS24455581</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|qilin.julius.wang@hotmail.com">Whole genome sequencing of Nocardioides nanjingensis T5</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>T5_G2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS24455581</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA2098290</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX28098643&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX28098643&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>