JSON

Genome sc|0003535

Name

“Marinarcus aquaticus”

Database

NCBI Assembly

Accession

GCF_004116335.1

Genomics

Accession
NCBI Assembly:GCF_004116335.1
Cultures
Strain sc|0038903
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.82%
  • Quality: 95.9
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
60.0 ×
Source
Other features
  • G+C Content: 34.9%
  • Coding Density: 93.75%
  • Codon Table: 11
  • N50: 370,020 bp
  • Contigs: 20
  • Largest Contig: 512,627 bp
  • Assembly Length: 2,533,736 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Raw sequence reads are unavailable, however, the name was first published in 2018, and thus does not require publicly available source data for the genome. The coverage is as indicated on NCBI for the genome. Completeness and contamination as estimated in NCBI with CheckM v. 1.2.3.
Automated checks
Complete
Last modified 5 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013
Location
Not detected
Toponym
Geo Loc Name: Spain
Environment
Sample Type: Whole organism
Isolation Source: water
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 6 days ago


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