SeqCode Registry
cognitis nomina
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Genomes
sc|0003540
JSON
Genome sc|0003540
Name
Regnicoccus antarcticus
Ts
Database
NCBI Assembly
Accession
GCA_049578805.1
Genomics
Accession
NCBI Assembly:
GCA_049578805.1
Cultures
Strain sc|0038565
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.1%
Contamination:
1.9%
Quality:
89.6
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
11.5 ×
Source
BioSample: SAMN12120381
Other features
G+C Content:
66.28%
Coding Density:
90.1%
Codon Table:
11
N50:
85,812 bp
Contigs:
65
Largest Contig:
203,276 bp
Assembly Length:
2,805,062 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
4 months ago
Sample Metadata
BioSample entries
BioSample: SAMN12120381
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
Generic.1.0
Biosamplemodel:
Generic
All retrieved samples
SAMN12120381
: Sample from Synechococcus sp. WH 5701
Metadata retrieved
4 months ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN12120381
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN12120381, SRS5012811
strain
WH 5701
INSDC secondary accession
SRS5012811
NCBI submission package
Generic.1.0
organism
Synechococcus sp. WH 5701
BioSampleModel
Generic
ENA-FIRST-PUBLIC
2020-01-01
ENA-LAST-UPDATE
2023-07-21
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Names
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Publications
Authors
Subjects
seqco.de/r:rmu87cu5