Genome sc|0003623


Database

INSDC Nucleotide

Accession

JBNGEK000000000.1

Genomics

Accession
INSDC Nucleotide:JBNGEK000000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.77%
  • Contamination: 0.64%
  • Quality: 93.55
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 27.0%)
  • tRNAs for 20 amino acids
Sequencing depth
106.0 ×
Source
Other features
  • G+C Content: 54.3%
  • Coding Density: 88.19%
  • Codon Table: 11
  • N50: 233,618 bp
  • Contigs: 52
  • Largest Contig: 641,648 bp
  • Assembly Length: 4,103,663 bp
  • Ambiguous Assembly Fraction: 0.0024%
Submitter comments
Completeness and contamination were assessed by CheckM (Parks et al., 2015).
Annotation of the genome was done by PGAP (Tatusova et al., 2016)
Automated checks
Complete

Last modified 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2022-10
Location
Lat Lon: 40° 9′ 44″ N, 66° 0′ 46″ E
View map of sampling locations
Toponym
Geo Loc Name: Uzbekistan: Navoiy Region
Environment
Isolation Source: sediment of a thermal stream
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved 2 months ago

Sequencing Experiments

WGS shotgun metagenome of sediments of the hot water stream formed by discharge of artesian groundwater located in Navoiy Region, Uzbekistan


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:mfkhvkkb