Genome sc|0003623

Genomics

Accession

INSDC Nucleotide:JBNGEK000000000.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.77%
• Contamination: 0.64%
• Quality: 93.55

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 27.0%)
• tRNAs for 20 amino acids

Sequencing depth

106.0 ×

Source

• SRA: SRX28630248

Other features

• G+C Content: 54.3%
• Coding Density: 88.19%
• Codon Table: 11
• N50: 233,618 bp
• Contigs: 52
• Largest Contig: 641,648 bp
• Assembly Length: 4,103,663 bp
• Ambiguous Assembly Fraction: 0.0024%

Submitter comments

Completeness and contamination were assessed by CheckM (Parks et al., 2015).
Annotation of the genome was done by PGAP (Tatusova et al., 2016)

Automated checks

Complete

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Last modified 4 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN40457753

Date

Collection Date: 2022-10

Location

Lat Lon: 40° 9′ 44″ N, 66° 0′ 46″ E

View map of sampling locations

Toponym

Geo Loc Name: Uzbekistan: Navoiy Region

Environment

Isolation Source: sediment of a thermal stream

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

• SAMN40457753: Metagenome or environmental sample from sediment metagenome

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Metadata retrieved 4 months ago