JSON

Genome sc|0000363

Name

Not registered

Database

NCBI Assembly

Accession

SAMN20205123

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:SAMN20205123
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.27%
  • Contamination: 3.34%
  • Quality: 72.57
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 46.0%)
  • tRNAs for 18 amino acids
Sequencing depth
11.25 ×
Source
Other features
  • G+C Content: 65.54%
Submitter comments
CheckM v1.0.11 was used to determine MAG completeness and contamination. Barrnap v0.7 was used to extract 16S rRNA gene sequences from the MAG and assess sequence completion. G/C content was calculated as a ratio of the entire genome. Assessed tRNAs with tRNAscan-SE v.2.0.12 and counted only distinct, standard tRNA.
Automated checks
Failed: Cannot find ncbi:assembly:SAMN20205123
Edit genome data
Last modified almost 2 years ago


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