Genome sc|0003636


Database

NCBI Assembly

Accession

GCA_049676595.1

Genomics

Accession
NCBI Assembly:GCA_049676595.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 98.3%)
  • 3 23S rRNAs (up to 96.9%)
  • tRNAs for 20 amino acids
Sequencing depth
415.0 ×
Source
Other features
  • G+C Content: 54.73%
  • Coding Density: 83.48%
  • Codon Table: 11
  • N50: 3,614,771 bp
  • Contigs: 1
  • Largest Contig: 3,614,771 bp
  • Assembly Length: 3,614,771 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Tool CheckM for GC content, completeness and contamination. Tool barrnap for 16S and 23S rRNA genes. Tool tRNAscan-SE for number of standard amino acids for which tRNA elements were detected.
Automated checks
Complete

Last modified about 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-06
Location
Lat Lon: 30° 50′ 28″ N, 34° 45′ 41″ E
View map of sampling locations
Toponym
Geo Loc Name: Israel: Midreshet Ben-Gurion
Environment
Env Broad Scale: desert area [ENVO:00000097]
Env Local Scale: sandy desert [ENVO:00000172]
Env Medium: biocrust [ENVO:01000909]
Other
Depth: 5 cm
Isol Growth Condt: PMID: 17483259, PMID: 19465530
Package
Ncbi Package: MIGS.ba.soil.6.0
All retrieved samples

Metadata retrieved about 1 year ago

Sequencing Experiments

PacBio-HiFi of Methanocella: desert biocrust


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