Genome sc|0003641

Genomics

Accession

NCBI Assembly:GCA_034423775.1

Cultures

Strain sc|0040320

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.9%
• Quality: 94.6

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

54.0 ×

Source

• SRA: SRX22632950
• SRA: SRX22632949

Other features

• G+C Content: 50.5%
• Coding Density: 88.34%
• Codon Table: 11
• N50: 3,622,411 bp
• Contigs: 1
• Largest Contig: 3,622,411 bp
• Assembly Length: 3,622,411 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 5 months ago

Sample Metadata

BioSample entries

• BioSample: SRS19630906

Date

Collection Date: 2020-09-16

Location

Lat Lon: 33° 32′ 60″ N, 118° 24′ W

View map of sampling locations

Toponym

Geo Loc Name: Pacific Ocean: Southern California Bight, San Pedro Basin, San Pedro Ocean Time Series

Environment

Env Broad Scale: ENVO:00002149

Env Local Scale: ENVO:00011764

Env Medium: ENVO:00002149

Other

Depth: 2m

Isol Growth Condt: Grown at 22C in AMS1 medium

Package

Ncbi Submission Package: MIGS.ba.water.6.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SRS19630906: MIGS Cultured Bacterial/Archaeal sample from Alphaproteobacteria bacterium US3C007

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Metadata retrieved 5 months ago