JSON

Genome sc|0000368

Name

Not registered

Database

NCBI Assembly

Accession

GCA_029821885.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCA_029821885.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.27% (automated estimate: 92.5%)
  • Contamination: 3.34% (automated estimate: 1.9%)
  • Quality: 72.57 (automated estimate: 83.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 46.0%) (automated estimate: 1)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids (automated estimate: 20)
Sequencing depth
11.25 ×
Source
Other features
  • G+C Content: 65.54% (automated estimate: 65.54%)
  • Coding Density: 89.23%
  • Codon Table: 11
  • N50: 12,416 bp
  • Contigs: 444
  • Largest Contig: 50,067 bp
  • Assembly Length: 3,794,735 bp
  • Ambiguous Assembly Fraction: 0.0045%
Submitter comments
CheckM v1.0.11 was used to determine MAG completeness and contamination. Barrnap v0.7 was used to extract 16S rRNA gene sequences from the MAG and assess sequence completion. G/C content was calculated as a ratio of the entire genome. Assessed tRNAs with tRNAscan-SE v.2.0.12 and counted only distinct, standard tRNA.
Automated checks
Complete
Edit genome data
Last modified about 1 year ago


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