JSON

Genome sc|0003916

Name

Mesorhizobium maamorense

Database

NCBI Assembly

Accession

GCA_044998965.1

Genomics

Accession
NCBI Assembly:GCA_044998965.1
Cultures
Strain sc|0040742
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 93.51%
  • Contamination: 1.39%
  • Quality: 86.56
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
50.0 ×
Source
Other features
  • G+C Content: 63.0%
  • Coding Density: 86.17%
  • Codon Table: 11
  • N50: 6,633,211 bp
  • Contigs: 2
  • Largest Contig: 6,633,211 bp
  • Assembly Length: 6,752,650 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
A total of 62,904 reads were generated through sequencing, with an N50 length of 9,919 bp. Adapter sequences from the Nanopore library were removed using Porechop (v0.2.4). Subsequent filtering with NanoFilt (v2.8.0) and further adapter trimming resulted in a refined dataset of 58,611 reads. These long reads were then assembled de novo using Flye assembler (v2.9.3-b1797), producing two contigs. The assembly was polished through four rounds of Racon (v1.5.0), followed by a final polishing step with Medaka (v2.0.1).
Automated checks
Complete
Last modified 20 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-05-10
Location
Not detected
Toponym
Geo Loc Name: Morocco: Maamora forest)
Environment
Sample Type: Pure single cell culture
Isolation Source: root nodules of Ononis repens
Other
Host: Ononis spinosa subsp. procurrens
Package
Not detected
All retrieved samples
Metadata retrieved 20 days ago

Sequencing Experiments

WGS Mesorhizobium sp.


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