JSON

Genome sc|0004049

Name

Not registered

Database

NCBI Assembly

Accession

GCF_002101315.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:GCF_002101315.1
Cultures
Strain sc|0039729
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0% (automated estimate: 97.2%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 100.0 (automated estimate: 92.7)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 29.21% (automated estimate: 29.21%)
  • Coding Density: 96.53%
  • Codon Table: 11
  • N50: 1,200,090 bp
  • Contigs: 1
  • Largest Contig: 1,200,090 bp
  • Assembly Length: 1,200,090 bp
  • Ambiguous Assembly Fraction: 0.0083%
Automated checks
Complete
Edit genome data
Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-07-19
Location
Lat Lon: 22° 10′ 58″ N, 38° 27′ 7.9″ E
View map of sampling locations
Toponym
Geo Loc Name: Saudi Arabia: central Red Sea
Environment
Sample Type: whole
Isolation Source: surface water
Other
Depth: 19 m
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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