SAG AG-892-F10

BioSample Accession(s)

SAMEA6069714, ERS3870829

collection_date

2009-07-14

assembly software

SPAdes;3,9.0; kmer set 21, 33, 55

environment (material)

marine photic zone

sample derived from

ERS3555720

geographic location (longitude)

-64.17

contamination score

0

ENA-FIRST-PUBLIC

2019-10-26

ENA-LAST-UPDATE

2019-10-14

completeness software

checkM

WGA amplification approach

mda based

environment (biome)

marine

environment (feature)

marine layer

geographic location (country and/or sea)

not applicable

ENA-CHECKLIST

ERC000048

organism

uncultured Alphaproteobacteria bacterium

sorting technology

flow cytometric cell sorting

assembly quality

Many fragments with little to no review of assembly other than reporting of standard assembly statistics

taxonomic identity marker

16S rRNA gene

completeness score

89

geographic location (latitude)

31.07

scientific_name

uncultured Alphaproteobacteria bacterium

investigation type

single amplified genome

metagenomic source

marine metagenome

project name

Harnessing the complexity of the marine microbiome through single cell genomics

sequencing method

Illumina

single cell or viral particle lysis approach

chemical

isolation_source

marine water

SAG AG-892-F10

BioSample Accession(s)

ERS3870829

collection_date

2009-07-14

assembly software

SPAdes;3,9.0; kmer set 21, 33, 55

environment (material)

marine photic zone

sample derived from

ERS3555720

geographic location (longitude)

-64.17

contamination score

0

ENA-FIRST-PUBLIC

2019-10-26

ENA-LAST-UPDATE

2019-10-14

completeness software

checkM

WGA amplification approach

mda based

environment (biome)

marine

environment (feature)

marine layer

geographic location (country and/or sea)

not applicable

ENA-CHECKLIST

ERC000048

organism

uncultured Alphaproteobacteria bacterium

sorting technology

flow cytometric cell sorting

assembly quality

Many fragments with little to no review of assembly other than reporting of standard assembly statistics

taxonomic identity marker

16S rRNA gene

completeness score

89

geographic location (latitude)

31.07

scientific_name

uncultured Alphaproteobacteria bacterium

investigation type

single amplified genome

metagenomic source

marine metagenome

project name

Harnessing the complexity of the marine microbiome through single cell genomics

sequencing method

Illumina

single cell or viral particle lysis approach

chemical

isolation_source

marine water

Metadata as EBI XML

<EXPERIMENT_SET>
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  <IDENTIFIERS>
    <PRIMARY_ID>ERX15066954</PRIMARY_ID>
    <SUBMITTER_ID namespace="georgia tech">ena-EXPERIMENT-TAB-30-09-2025-21:57:21:673-92924</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>NextSeq 500 paired end sequencing</TITLE>
  <STUDY_REF accession="ERP116061">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP116061</PRIMARY_ID>
      <SECONDARY_ID>PRJEB33281</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS3870829">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS3870829</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6069714</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>AG-892-F10</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGA</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC SINGLE CELL</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>MDA</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS3870829</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA35027618</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>