JSON

Genome sc|0004113

Name

Not registered

Database

NCBI Assembly

Accession

CP136016.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
NCBI Assembly:CP136016.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.98%
  • Contamination: 0.15%
  • Quality: 99.23
Ribosomal and transfer RNA genes
  • 1538 16S rRNAs (up to 100.0%)
  • 2907 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
171.0 ×
Source
Other features
  • G+C Content: 55.9%
Submitter comments
As requested, the following methods were used:
- G+C content was calculated using QUAST v4.4.
- Genome completeness and contamination were estimated with CheckM v1.0.18.
- Ribosomal RNA genes were identified using barrnap v0.9.
- Transfer RNA genes and standard amino acids were annotated with tRNAscan-SE v2.0.12.
Automated checks
Failed: Cannot find ncbi:assembly:CP136016.1
Edit genome data
Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2007
Location
Not detected
Toponym
Geo Loc Name: Chile: Buin, Region Metropolitana de Santiago
Environment
Sample Type: Tissue sample
Isolation Source: skin grape
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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