Genome sc|0004118


Database

INSDC Nucleotide

Accession

AP040136.1

Genomics

Accession
INSDC Nucleotide:AP040136.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 15 amino acids
Sequencing depth
8500.0 ×
Source
Other features
  • G+C Content: 28.96%
  • Coding Density: 94.12%
  • Codon Table: 11
  • N50: 238,034 bp
  • Contigs: 1
  • Largest Contig: 238,034 bp
  • Assembly Length: 238,034 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-11-15
Location
Lat Lon: 34° 17′ 24″ N, 139° 3′ 36″ E
View map of sampling locations
Toponym
Geo Loc Name: Japan:Shizuoka
Environment
Sample Type: single cell
Isolation Source: sea water
Env Broad Scale: sea
Env Local Scale: surface water
Env Medium: sea water
Other
Not detected
Package
Ncbi Submission Package: MIMAG.host-associated.6.0 • Generic.1.0
Biosamplemodel: MIMAG.host-associated • Generic
All retrieved samples

Metadata retrieved 4 months ago

Sequencing Experiments

Illumina NovaSeq 6000 paired end sequencing of SAMD00658771
MinION sequencing of SAMD00658771


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