JSON

Genome sc|0000042

Database

NCBI Assembly

Accession

GCA_020687165.1

Genomics

Accession
NCBI Assembly:GCA_020687165.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 1.9%
  • Quality: 88.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 50.0%)
  • tRNAs for 20 amino acids
Sequencing depth
92.0 ×
Source
Other features
  • G+C Content: 52.73%
  • Coding Density: 88.14%
  • Codon Table: 11
  • N50: 209,253 bp
  • Contigs: 37
  • Largest Contig: 543,757 bp
  • Assembly Length: 2,853,755 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-11-23
Location
Lat Lon: 50.776920 N 6.043417 E
Toponym
Geo Loc Name: Germany: Aachen
Environment
Isolation Source: feces
Env Broad Scale: Human gut microbiome
Env Local Scale: Human gut
Env Medium: Feces
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 9 months ago


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