JSON

Genome sc|0000420

Name

Not registered

Database

INSDC Nucleotide

Accession

JAUCGA000000000

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:JAUCGA000000000
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 91.3%
  • Contamination: 0.0%
  • Quality: 91.3
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
70.0 ×
Source
Other features
  • G+C Content: 46.0%
Submitter comments
The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for gene annotation (identify tRNA and rRNA genes). Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA. The completion figure from checkM was 90% (0% contamination), while MiGA project informed 91.3% (0% contamination). Thus, the completion informed is from MiGA. This genome is proposed as a type for the new species Sedimentiflexa bahamondei.
Automated checks
Failed: Cannot find ncbi:nuccore:JAUCGA000000000
Edit genome data
Last modified over 1 year ago


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