Genome sc|0000431

Genomics

Accession

NCBI Assembly:GCA_030378065.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 98.0% (automated estimate: 100.0%)
• Contamination: 0.0% (automated estimate: 2.8%)
• Quality: 98.0 (automated estimate: 86.0)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 20 amino acids (automated estimate: 20)

Sequencing depth

192.0 ×

Source

• BioSample: SAMN35709906

Other features

• G+C Content: 43.0% (automated estimate: 44.92%)
• Coding Density: 88.66%
• Codon Table: 11
• N50: 67,678 bp
• Contigs: 115
• Largest Contig: 177,457 bp
• Assembly Length: 4,408,079 bp
• Ambiguous Assembly Fraction: 0.025%

Submitter comments

The assembly of the genome was carried out using the SPAdes v3.15.1 program. Prokka v1.14.6 program was used for gene annotation. Furthermore, the NCBI Prokaryotic Genome Annotation Pipeline (PGAP) is in the NCBI database. Completion and contamination were estimated by the CheckM v.1.2.1 program and MiGA project. The completion from checkM was 98% (0% contamination), while MiGA project informed 100% of completion (4.3% contamination). This genome assembly is proposed to replace  the genome and name "Candidatus Venteria ishoeyi",  as the novel type, having better quality than the former "Candidatus" genome (https://lpsn.dsmz.de/species/venteria-ishoeyi) and Assembly = GCA_900099115.2.

Automated checks

Complete

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Last modified about 1 year ago