Genome sc|0004358 Ts


Database

INSDC Nucleotide

Accession

JBBJJH000000000.1

Typification

Nomenclatural type of:

Genomics

Accession
INSDC Nucleotide: JBBJJH000000000.1 [NCBI | EMBL]
Cultures
Strain sc|0040323
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 98.74%
  • Contamination: 0.84%
  • Quality: 94.54
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 31.5%
  • Coding Density: 86.68%
  • Codon Table: 11
  • N50: 120,980 bp
  • Contigs: 56
  • Largest Contig: 262,599 bp
  • Assembly Length: 3,746,535 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Completeness and contamination were assessed by CheckM2 (Chklovski et al., 2023). Genome annotation was done by PGAP (Tatusova et al., 2016)
Automated checks
Complete

Last modified about 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08-08
Location
Not detected
Toponym
Geo Loc Name: Russia: Altai region, Kulunda Steppe
Environment
Sample Type: anaerobic sediments
Isolation Source: anaerobic sediments from hypersaline soda lake
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples

Metadata retrieved about 1 year ago

Sequencing Experiments

WGS of binary culture ANBcell28


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