Genome sc|0004358


Database

INSDC Nucleotide

Accession

JBBJJH000000000.1

Typification

Nomenclatural type of:

Genomics

Accession
INSDC Nucleotide:JBBJJH000000000.1
Cultures
Strain sc|0040323
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 98.74%
  • Contamination: 0.84%
  • Quality: 94.54
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 31.5%
  • Coding Density: 86.68%
  • Codon Table: 11
  • N50: 120,980 bp
  • Contigs: 56
  • Largest Contig: 262,599 bp
  • Assembly Length: 3,746,535 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Completeness and contamination were assessed by CheckM2 (Chklovski et al., 2023). Genome annotation was done by PGAP (Tatusova et al., 2016)
Automated checks
Complete

Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-08-08
Location
Not detected
Toponym
Geo Loc Name: Russia: Altai region, Kulunda Steppe
Environment
Sample Type: anaerobic sediments
Isolation Source: anaerobic sediments from hypersaline soda lake
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples

Metadata retrieved 11 months ago

Sequencing Experiments

WGS of binary culture ANBcell28


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