JSON

Genome sc|0004364

Name

Not registered

Database

INSDC Nucleotide

Accession

GCF_049675845.1

Marked for deletion

This genome is currently not registered as the nomenclatural type or the reference genome of any names in the Registry, and it will be purged from the database soon unless it is linked to a name

Genomics

Accession
INSDC Nucleotide:GCF_049675845.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.32%
  • Quality: 98.4
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
601.0 ×
Source
Other features
  • G+C Content: 64.41%
Submitter comments
Genome quality was assessed using CheckM v1.2.1, which indicated 100% completeness and 0.32% contamination. Ribosomal RNAs were identified with Barrnap, revealing two full-length 16S and 23S rRNA operons, and two 5S rRNAs. Transfer RNAs were detected with tRNAscan-SE, covering all 20 standard amino acids. The assembly was generated with Flye using PacBio HiFi reads and consists of a single circular contig of 4.02 Mb with a G+C content of 64.41%.
Automated checks
Failed: Cannot find ncbi:nuccore:GCF_049675845.1
Edit genome data
Last modified 5 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Not detected
All retrieved samples
Metadata retrieved 5 months ago


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